#!/usr/bin/perl
use strict;
use Data::Dumper;
use File::Glob ':glob';
	
my @dirs = glob("C:/Documents and Settings/mydir/Desktop/KOMP/*");

foreach my $maid_dir(@dirs){
	if (-d $maid_dir){ # directory check
		if ($maid_dir=~m%\d+\s[A-Z]%){ # match the dir name
			my $seq_dir = $maid_dir."/sequencing/";
			chdir ($maid_dir);
			next if (-M $seq_dir > 1.0);
			chdir ($seq_dir);
			#print Dumper ($maid_dir, $seq_dir);
			opendir my $dh, "$seq_dir";
			if(-d $seq_dir){
				my @files = readdir $dh;
				#my $path = @_;
				for my $f(@files){
					if($f=~ m%^(\d*)(HU.fa|HD.fa|Ltvec_small.FA|_fasta)$%){
						my ($fa, $hu, $hd, $lt)= ($1."_fasta", $1."HU.fa", $1."HD.fa", $1."Ltvec_small.FA");
						if(-e $fa){
							open( my $in, ">>".$seq_dir."/".$fa);
							#open( my $out, ">>".$seq_dir."/".$fa);
							print $in, "\n" ;#"$hu,$hd,$lt\n";
							print Dumper($f);
							close($in);
						}
					}
				}
			}			
		}
	}	
}