hello every one i have a program to identify a given motif in the dna seq and color that particular region alone. when i am trying it by using ansi color my entire seq is being colored what should i do to color only the motif part here is the code that i have used
#use strict;
#use warnings;
#Progarm to find motif site in a given protein sequence using files
use Term::ANSIColor
open(READ,"<dna.txt");
@e=<READ>;
$a=join(" ",@e);
$a=~s/\s+//gi;
$s=0;@c;
for($i=0;$i<length($a);$i++)
{
$d=substr($a,$i,6);
if($d eq "AGGGGG")
{
print color 'bold green';
$s++;
push(@c,$i+1);
}
}
print $a ;
print"NUMBER OF SITES THE MOTIF (AGGGGG) IS PRESENT: $s\n";
print"AND THE POSITION IN THE STRING IS:",
print join(',',(@c,"\n")),"\n\n";
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