use Algorithm::Diff qw(diff sdiff LCS traverse_sequences);
+
my @seq1= split //,"1 AGCTGATCGAGCTAGTACCCTAGCTC 26";
my @seq2 =split //,"15 AGCTGATCGAGCTAGTACCCTATCTC 40";
my @diffs = diff( \@seq1, \@seq2 );
foreach (@diffs) {
foreach (@{$_}) {
print join " " => @{$_},"\n";
}
print "\n";
}
And here is the output which shows the difference at each position if any.
So on '25th' position, you have 'G' in one, and 'T' in the other.
+ 1 5
- 2
- 25 G
+ 25 T
- 30 2
+ 30 4
- 31 6
+ 31 0
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