Maybe you should look into svk which is a distributed version control system written in Perl and built on top of subversion, that should satisfy your requirements for scriptability/control. You could maintain several trees for the different purposes (fixes, updates etc.) and merge as you see appropriate. Also, with svk users can have their own repository with local plugins and you'll just have to devise a clever way for them to merge your central changes with their local tree in a non-confusing manner.
Debugging is twice as hard as writing the code in the first place. Therefore, if you write the code as cleverly as possible, you are, by definition, not smart enough to debug it. -- Brian W. Kernighan
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