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My first suggestion would be to try a different version of DBD::SQLite. The actual error is from the DBI XS code and may stem from primary_key_info() in DBD::SQLite. You can either look in there or send a message to the DBI mailing list.
If you know C (and XS), trying to find the actual problem and sending in a patch will be a Good Thing :)
I'd also try bunding everything and trying to get it to run on a completely different box to find out if if the problem is specific to your box.
New address of my CGI Course.
In reply to Re: SQLite Documentation