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Perlmonks, This is the question I am having trouble answering Use random DNA sequence generator as many times as you need to get the protein-coding region(s) (nucleotide triplets). Minimum sequence length is 500bp. • Find all possible protein-coding regions in microbes (between start and stop codons, ATG – TAG|TGA|TAA). • Using Standard Genetic Code table (Wikipedia or any other sources), create hash table for all amino acids ($amino{TTT} => "F", ...).
• Write found protein sequences into file with the next format: For example: 45: FLPQWCV [7] I am sort of clueless and not sure where to start. To find the coding sequence I have generated a 5000bp random nucleotide but everytime i use the code below to find a coding region it returns nothing. Can anyone tell me what i am doing wrong?
In reply to Bioinformatics coding question by charm
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