Hello perlmonks!
I need some advice,
I got this file:
Rank Gene Symbol Definition Clusters Enriched Clusters Interactors Drugs Fold Change Pvalue
1 IL1B interleukin 1 beta 11 10 1 21 1.6227 0.0112
2 PSMD6 proteasome 26S subunit, non-ATPase 6 7 7 10 0 0.6027 0.0300
and I want to write another file with only the names of genes(Gene Symbol).
My code:
#!usr\bin\perl -w
open HUBFILE,"1048_undefined.tsv";
@hub=();
while(my $line = <HUBFILE>){
if($line=~m/\d \t (\w+) \t \.+/g){
push(@hub,$1);
}
}close HUBFILE;
open OUT,">hubs.txt";
print OUT "HUB:$hub[0]\n";
close OUT;
I'm new in programming and trying to learn perl for biology.
-
Are you posting in the right place? Check out Where do I post X? to know for sure.
-
Posts may use any of the Perl Monks Approved HTML tags. Currently these include the following:
<code> <a> <b> <big>
<blockquote> <br /> <dd>
<dl> <dt> <em> <font>
<h1> <h2> <h3> <h4>
<h5> <h6> <hr /> <i>
<li> <nbsp> <ol> <p>
<small> <strike> <strong>
<sub> <sup> <table>
<td> <th> <tr> <tt>
<u> <ul>
-
Snippets of code should be wrapped in
<code> tags not
<pre> tags. In fact, <pre>
tags should generally be avoided. If they must
be used, extreme care should be
taken to ensure that their contents do not
have long lines (<70 chars), in order to prevent
horizontal scrolling (and possible janitor
intervention).
-
Want more info? How to link
or How to display code and escape characters
are good places to start.
|