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BioPerl: Best Gene Ontology APIby BioLion (Curate) |
on Aug 23, 2010 at 10:14 UTC ( [id://856672]=perlquestion: print w/replies, xml ) | Need Help?? |
BioLion has asked for the wisdom of the Perl Monks concerning the following question: Dear Monks, A bioinformatics question: I have been doing more and more Gene Ontology (GO) work, specifically, I am looking for enriched terms in my various gene sets. I usually go through the web-based programs like DAVID or Babelomics. However, I now need a high-throughput approach, but was disappointed to only find GO::TermFinder on CPAN. There are plenty of GO handlers/parsers available, but far fewer analytical tools, so I wondered if anyone had any experience of doing GO term enrichment on many many groups of genes?
NB: I have cross-posted a similar question on seqAnswers in an attempt to keep this one BioPerl/perl related...
Just a something something...
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