use strict;
use warnings;
use XML::LibXML;
print XML::LibXML->new->parse_fh(*DATA)->toString(2);

__DATA__
<?xml version="1.0" encoding="UTF-8"?>
<config>
  <sites>
    <site>
      <sitename><![CDATA[www.example.com]]></sitename>
      <active><![CDATA[1]]></active>
      <rooturl><![CDATA[http://www.example.com.com/]]></rooturl>
      <name><![CDATA[Example]]></name>
    </site>
  <site><sitename>Test entry</sitename><name></name><rooturl><![CDATA[http://www.test.com.com/]]></rooturl><reportname><![CDATA[test report name]]></reportname></site></sites>
</config>

##</code><code>##

?xml version="1.0" encoding="UTF-8"?>
<config>


  <sites>


    <site>


      <sitename>
<![CDATA[www.example.com]]>
      </sitename>


      <active>
<![CDATA[1]]>
      </active>


      <rooturl>
<![CDATA[http://www.example.com.com/]]>
      </rooturl>


      <name>
<![CDATA[Example]]>
      </name>


    </site>


    <site>
      <sitename>
Test entry
      </sitename>
      <name/>
      <rooturl>
<![CDATA[http://www.test.com.com/]]>
      </rooturl>
      <reportname>
<![CDATA[test report name]]>
      </reportname>
    </site>
  </sites>


</config>