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Re^4: duplicates getting omitted while comparing values inside foreach.

by patric (Acolyte)
on Apr 16, 2009 at 10:14 UTC ( #757922=note: print w/replies, xml ) Need Help??


in reply to Re^3: duplicates getting omitted while comparing values inside foreach.
in thread duplicates getting omitted while comparing values inside foreach.

Please excuse me for my fast/paranoid decisions. i get confused easily when i face little problems. I confuse other people also... am sorry for that. I have to build some patience in me. hehehehe :) well, the criteria is to match the alphabets. The alphabets seen in the 3rd column of file2.query should be checked if its available in the 5th(last) column of file1.db. In case, the only common columns are the 2nd and 3rd of file1 and 1st and 2nd column of file2. With this as basis, i compare the alphabets in both the entries(files). For every line in file2, If all (2-seperated by'>') the alphabets (seperated by '/'. can be many, just not 2) are found in file1 at the corresponding line, its reported as a HIT. In the output i needed
1190 31789 A > G 1 2 5 zm1829427
only in this lines, the "A>G" of file2 matches with "A/G" of file1. The rest is not considered as hit because, the alphabets of file2 in not present in file1. my final decision: the output is:
1190 31277 A > T 1 0 0 - 1190 31607 C > A 0 3 1 - 1190 31629 C > T 0 2 0 - 1190 31789 A > G 1 2 5 zm1829427 1190 31882 A > C 0 4 0 - 1190 31883 T > A 0 4 0 - 1190 31883 T > C 2 2 5 - 1190 32199 C > T 0 1 1 - 1190 32487 T > C 0 1 1 - 1190 32496 A > G 0 3 0 - Total number of HITS: 1

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