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Re^3: Comparing strings (exact matches) in LARGE numbers FASTby bioinformatics (Friar) |
on Aug 29, 2008 at 22:10 UTC ( [id://707843]=note: print w/replies, xml ) | Need Help?? |
If you are scanning for motifs, you should be able to adapt TFBS to do that, as a binding site is a motif itself. On another note, STORM is another software program that is designed to do such searches, and can be integrated with a database (Statistical significance of cis-regulatory modules
BMC Bioinformatics 2007, 8:19). I think that officially puts me out of ideas otherwise :)
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