Re^3: Comparing strings (exact matches) in LARGE numbers FAST


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Re^3: Comparing strings (exact matches) in LARGE numbers FAST

by bioinformatics (Friar)

on Aug 29, 2008 at 22:10 UTC ( [id://707843]=note: print w/replies, xml )

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in reply to Re^2: Comparing strings (exact matches) in LARGE numbers FAST
in thread Comparing strings (exact matches) in LARGE numbers FAST

If you are scanning for motifs, you should be able to adapt TFBS to do that, as a binding site is a motif itself. On another note, STORM is another software program that is designed to do such searches, and can be integrated with a database (Statistical significance of cis-regulatory modules BMC Bioinformatics 2007, 8:19). I think that officially puts me out of ideas otherwise :)

Bioinformatics