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Re^2: Search for identical substringsby bioMan (Beadle) |
on Aug 18, 2005 at 15:52 UTC ( [id://484832]=note: print w/replies, xml ) | Need Help?? |
The data I am working with are DNA sequences. (I know of the Bioperl project but have found nothing there that could help.) I have distilled the data to the DNA sequences alone. I have a second file with the sequence IDs, which is why I also print out the indicies from the matching strings. The data look like this.
ATGGAGAACATCACATCAGGACTCCTAGGACCCCTTCTCGTGTTACAGGC With the sequence IDs the data would look like this.
>seq1 ### update ### I have placed real data in my public scratchpad.
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