I don't see where Perl6 comes into it. Both branches of mod_perl are working off Perl5 and will probably continue to do so for some time. There is a mod_parrot project underway, though. IMHO, working at the Parrot level makes more sense, as it gives Apache integration with a bunch of other languages for free.
You are correct that not all the old modules work on mod_perl2 yet. You need to ask yourself if you need to use any of the modules that don't currently work. If not, then go ahead and use mod_perl2. If so, you must either use mod_perl1, be willing to put effort into porting those modules, or wait.
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send money to your kernel via the boot loader.. This and more wisdom available from Markov Hardburn.
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