You can coax a Schwartzian transform into doing this work for you:
use strict;
use warnings;
map{print $_->[0]}
sort{$a->[1] <=> $b->[1] || $a->[2] <=> $b->[2]}
map{[$_, (split /\t/)[2], (split /\t/)[3]]}
<DATA>;
#ID distance score value start stop done remainin
+g
__DATA__
N_425 614 17.01 425 40 12 308 322
N_542 1290 18.74 542 53 15 237 251
N_372 870 15.66 372 80 15 262 276
N_236 814 15.65 236 69 13 185 200
N_991 814 14.65 9 69 13 185 200
N_992 814 14.65 8 69 13 185 200
N_993 814 14.65 7 69 13 185 200
N_994 814 14.65 6 69 13 185 200
N_995 814 14.65 5 69 13 185 200
Results:
N_995 814 14.65 5 69 13 185 200
N_994 814 14.65 6 69 13 185 200
N_993 814 14.65 7 69 13 185 200
N_992 814 14.65 8 69 13 185 200
N_991 814 14.65 9 69 13 185 200
N_236 814 15.65 236 69 13 185 200
N_372 870 15.66 372 80 15 262 276
N_425 614 17.01 425 40 12 308 322
N_542 1290 18.74 542 53 15 237 251
Thank you, scorpio17, for the extended data set; and the sorting routine here is essentially the same as yours.
Hope this helps!
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