this is correct... so instead of 3 hits, it should be 1.
final result should look like :
1190 31277 A > T 1 0 0 -
1190 31607 C > A 0 3 1 -
1190 31629 C > T 0 2 0 -
1190 31789 A > G 1 2 5 zm1829427
1190 31882 A > C 0 4 0 -
1190 31883 T > A 0 4 0 -
1190 31883 T > C 2 2 5 -
1190 32199 C > T 0 1 1 -
1190 32487 T > C 0 1 1 -
1190 32496 A > G 0 3 0 -
Total number of Hits: 1
sorry for the confusion in between :(
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