The way I do it is to separate the application logic from web logic. I create a line of objects which drive the application, talking to the database, and I use a separate line to generate html code, which basically boils down to reading forms and calling the application level and then generating html for the response. That makes things pretty clean, whether you choose to use Template::Toolkit, HTML::Mason or anything else.
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Want more info? How to link
or How to display code and escape characters
are good places to start.
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