$app/bin your main script and/or associated utilities $app/etc configuration files, persistent state $app/lib all of your modules or 3rd-party modules you need to bundle $app/var any misc. state or files you create/use at run-time (if any) $app/doc documentation (though a README or INSTALL would be nice in $app/) $app/htdocs the web 'root' of your application, attached to your web site using server configuration