in reply to Re: Re: Similarity of strings
in thread Similarity of strings

Perhaps bioperl has a BLAST parser you could use? (I've never used their parsers, so I cannot comment further.)

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Re: Re: Re: Re: Similarity of strings
by professa (Beadle) on May 16, 2002 at 12:02 UTC
    I'm using BioPerl already, but I think parsing a 40-200 Mb BLAST-report is over the top and won't save much time (if at all) over calculating the similarities by myself. In fact, that would be a real memory-filler. ;-)