Re^14: how to read input from a file, one section at a time?


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Re^14: how to read input from a file, one section at a time?

by davi54 (Sexton)

on Apr 02, 2019 at 16:38 UTC ( [id://1232030]=note: print w/replies, xml )

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in reply to Re^13: how to read input from a file, one section at a time?
in thread how to read input from a file, one section at a time?

Hi Poj,
When I made the modifications that you suggested, for some reason, it mucked up the entire script. It started giving me errors like:
Use of uninitialized value $lowest in printf at poj_repeat.pl line 60, <$PROTFILE> chunk 2.
Use of uninitialized value $lowest in numeric eq (==) at poj_repeat.pl line 61, <$PROTFILE> chunk 2.
Use of uninitialized value in numeric eq (==) at poj_repeat.pl line 61, <$PROTFILE> chunk 2.
Can you help me with this? Use of uninitialized value in concatenation (.) or string at poj_repeat.pl line 62, <$PROTFILE> chunk 2.
Missing argument in printf at poj_repeat.pl line 67, <$PROTFILE> chunk 2.
Missing argument in printf at poj_repeat.pl line 67, <$PROTFILE> chunk 2

Comment on Re^14: how to read input from a file, one section at a time?

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Re^15: how to read input from a file, one section at a time? by poj (Abbot) on Apr 02, 2019 at 17:21 UTC
Did you remove or comment out the original line ? `#next FASTA_RECORD if $fasta_seen{ $para }++;` [download] poj	[reply] [d/l]
Re^16: how to read input from a file, one section at a time? by davi54 (Sexton) on Apr 02, 2019 at 17:36 UTC
However, now the script has stopped giving me the duplicate information. I have a test file where I have put the same sequence twice. It was giving me the duplicate print message earlier, but not anymore after fixing the semicolon issue.	[reply]
Re^15: how to read input from a file, one section at a time? by davi54 (Sexton) on Apr 02, 2019 at 17:30 UTC
Hi, Yes, I did. I actually forgot to put a semicolon. Lol. Nevermind.	[reply]

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