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Question for people working with SAM files in genome alignmentsby Anonymous Monk |
on Dec 21, 2017 at 12:17 UTC ( [id://1205975]=perlquestion: print w/replies, xml ) | Need Help?? |
Anonymous Monk has asked for the wisdom of the Perl Monks concerning the following question:
Dear friends, I have started a project in Genomics, which involves using the SAM alignment files. My question is, if any of you has previously succeeded in combining the CIGAR and MD strings from the SAM file in order to reconstruct the alignment. I cannot find some code and I assume this has been done in the past. Any help would be greatly appreciated!
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