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Re^3: DNA Pattern Matching

by Sinistral (Monsignor)
on Jul 20, 2017 at 15:22 UTC ( #1195622=note: print w/replies, xml ) Need Help??


in reply to Re^2: DNA Pattern Matching
in thread DNA Pattern Matching

Yes - there is BioPerl.org

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Re^4: DNA Pattern Matching
by Speed_Freak (Sexton) on Jul 20, 2017 at 15:46 UTC

    While my data falls into the bio realm, I don't think the actual operation uses anything that BioPerl provides. (We do have BioPerl on the server as it is used in other scripts.) I have sent a registration request to the BioPerl mailing list though.

    If it helps, think of my data as some sort of date string where I need to search for any other occurrences of the central portion. 072017, where I need to find any other "transaction" that happened with the matching month of 07 and year of 17. Basically I need to split each string into three parts, and find matches in the database that are identical only in the first and last part. (But I have 250k+ iterations to search from, through a list of over 1 million strings each time.)

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