Re: How can one retrieve the transcript, 5 prime and 3 prime UTR of an Ensembl identifier?


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Re: How can one retrieve the transcript, 5 prime and 3 prime UTR of an Ensembl identifier?

by erix (Prior)

on Jun 12, 2017 at 15:44 UTC ( [id://1192609]=note: print w/replies, xml )

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in reply to How can one retrieve the transcript, 5 prime and 3 prime UTR of an Ensembl identifier?

Perlmonks are not biologists, so explain:

transcript
prime
5 prime and 3 prime
UTR
Ensembl

Or perhaps have a look here: http://rest.ensembl.org/

Comment on Re: How can one retrieve the transcript, 5 prime and 3 prime UTR of an Ensembl identifier?

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Re^2: How can one retrieve the transcript, 5 prime and 3 prime UTR of an Ensembl identifier?
by supriyoch_2008 (Monk) on Jun 12, 2017 at 17:32 UTC

Hi erix,

I am sorry for not mentioning the full terms in my post.

Transcript is the mature RNA sequence that encodes a protein. Transcript is produced from DNA by the process of transcription. It starts with ATG and usually ends with TAA, TAG or TGA.

5 prime UTR (5' UTR) stands for untranslated region found in primary mRNA or pre-mRNA at one end of DNA strand with a phosphate group. It is a sequence of nucleotides.

3 prime UTR (3' UTR) means a sequence of nucleotides which is untranslated and found at the other end of a transcript with a hydroxyl group (OH).

Ensembl is a database of DNA, RNA and protein and freely available at http://www.ensembl.org/index.html

With regards,

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