One thing is sure, $self->profile returns undef. Just a wild guess: strip_prefix_from_paths() removes the ABC::XYZ from ABC::XYZ::myscript from the filename string. Or something to that effect, the ABC::XYZ is taken from your @INC I guess. I also guess that it's likely the eval refers to eval'ing some require'd modules. You could change the code like: [defined($self->profile) ? $self->profile->inc : () ], that is, give it an empty @INC if profile is undefined.
However, something must be seriously wrong in your usage and right now you are the only one who can fix that, the rest of us we are just guessing wildly. So, reduce this problem to a minimum.
Also, show the versions of all modules involved.