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Re^2: Storage of proteins from diferent ORF

by frozenwithjoy (Priest)
on Apr 25, 2014 at 04:55 UTC ( #1083728=note: print w/replies, xml ) Need Help??


in reply to Re: Storage of proteins from diferent ORF
in thread Storage of proteins from diferent ORF

I had to do some translation from DNA/RNA to amino acids and grabbed this codon table. I found, however, that there are a couple missing amino acids and one or two mistakes. Just want to drop a fixed version here in case people come looking in the future:
my %codon_table = ( AAA => 'K', AAC => 'N', AAG => 'K', AAT => 'N', ACA => 'T', ACC => 'T', ACG => 'T', ACT => 'T', AGA => 'R', AGC => 'S', AGG => 'R', AGT => 'S', ATA => 'I', ATC => 'I', ATG => 'M', ATT => 'I', CAA => 'Q', CAC => 'H', CAG => 'Q', CAT => 'H', CCA => 'P', CCC => 'P', CCG => 'P', CCT => 'P', CGA => 'R', CGC => 'R', CGG => 'R', CGT => 'R', CTA => 'L', CTC => 'L', CTG => 'L', CTT => 'L', GAA => 'E', GAC => 'D', GAG => 'E', GAT => 'D', GCA => 'A', GCC => 'A', GCG => 'A', GCT => 'A', GGA => 'G', GGC => 'G', GGG => 'G', GGT => 'G', GTA => 'V', GTC => 'V', GTG => 'V', GTT => 'V', TAA => '-', TAC => 'Y', TAG => '-', TAT => 'Y', TCA => 'S', TCC => 'S', TCG => 'S', TCT => 'S', TGA => '-', TGC => 'C', TGG => 'W', TGT => 'C', TTA => 'L', TTC => 'F', TTG => 'L', TTT => 'F', );

EDIT: Here is one I made that I like more. It is structured like you normally see codon tables in books.

my %codon_table = ( TTT => 'F', TCT => 'S', TAT => 'Y', TGT => 'C', TTC => 'F', TCC => 'S', TAC => 'Y', TGC => 'C', TTA => 'L', TCA => 'S', TAA => '-', TGA => '-', TTG => 'L', TCG => 'S', TAG => '-', TGG => 'W', CTT => 'L', CCT => 'P', CAT => 'H', CGT => 'R', CTC => 'L', CCC => 'P', CAC => 'H', CGC => 'R', CTA => 'L', CCA => 'P', CAA => 'Q', CGA => 'R', CTG => 'L', CCG => 'P', CAG => 'Q', CGG => 'R', ATT => 'I', ACT => 'T', AAT => 'N', AGT => 'S', ATC => 'I', ACC => 'T', AAC => 'N', AGC => 'S', ATA => 'I', ACA => 'T', AAA => 'K', AGA => 'R', ATG => 'M', ACG => 'T', AAG => 'K', AGG => 'R', GTT => 'V', GCT => 'A', GAT => 'D', GGT => 'G', GTC => 'V', GCC => 'A', GAC => 'D', GGC => 'G', GTA => 'V', GCA => 'A', GAA => 'E', GGA => 'G', GTG => 'V', GCG => 'A', GAG => 'E', GGG => 'G', );

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