#!/usr/bin/env perl

use strict;
use warnings;

use Data::Dumper;
use Inline::Files;

my (@range, %capture);
my $line_re = qr[^(?:\d+\s+){3}(\d+)];

while (<INTERVALS>) {
    my ($min, $max) = (split)[1,2];
    push @range => [ $min, $max ];
    $capture{range}{$min} = $max;
}

while (<FRAME>) {
    chomp;
    collate($_);
}

{
    local $Data::Dumper::Indent = 1;
    local $Data::Dumper::Sortkeys = 1;
    print Dumper \%capture;
}

sub collate {
    my $line = shift;
    my ($key) = $line =~ $line_re;

    for (@range) {
        last if $_->[0] > $key;
        next if $_->[1] < $key;
        push @{$capture{data}{$_->[0]}} => $line;
    }
}

__INTERVALS__
chrX    1   1000001
chrX    100001  1100001
chrX    200001  1200001
chrX    300001  1300001
chrX    400001  1400001
chrX    500001  1500001
chrX    600001  1600001
chrX    700001  1700001
chrX    800001  1800001
__FRAME__
0 25 27 260692 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3
0 19 33 160466 2 2 3 2 2 2 3 3 3 3 1 1 2 1 2 3 3 3 2 1 2 3 2 2 3 3
0 25 27 60454 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3
0 25 27 3260882 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3
0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1
0 46 6 1660866 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2
0 48 4 6460888 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2
0 50 2 60909 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1

##</code><code>##

$VAR1 = {
  'data' => {
    '1' => [
      '0 25 27 260692 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3',
      '0 19 33 160466 2 2 3 2 2 2 3 3 3 3 1 1 2 1 2 3 3 3 2 1 2 3 2 2 3 3',
      '0 25 27 60454 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3',
      '0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1',
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1',
      '0 50 2 60909 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1'
    ],
    '100001' => [
      '0 25 27 260692 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3',
      '0 19 33 160466 2 2 3 2 2 2 3 3 3 3 1 1 2 1 2 3 3 3 2 1 2 3 2 2 3 3',
      '0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1',
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '200001' => [
      '0 25 27 260692 2 2 3 2 2 3 3 3 2 3 1 1 2 1 2 2 3 3 2 1 2 1 1 1 2 3',
      '0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1',
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '300001' => [
      '0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1',
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '400001' => [
      '0 50 2 460727 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1',
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '500001' => [
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '600001' => [
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1'
    ],
    '700001' => [
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1',
      '0 46 6 1660866 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2'
    ],
    '800001' => [
      '0 48 4 860814 1 1 1 1 1 1 2 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1',
      '0 46 6 1660866 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 2 2 2 1 1 1 1 1 1 1 2'
    ]
  },
  'range' => {
    '1' => '1000001',
    '100001' => '1100001',
    '200001' => '1200001',
    '300001' => '1300001',
    '400001' => '1400001',
    '500001' => '1500001',
    '600001' => '1600001',
    '700001' => '1700001',
    '800001' => '1800001'
  }
};