in reply to Network format for Gene Ontology
Hi,
There is a Perl API available for working with MySQL GO databases in the go-dev CVS repository (the entire CVS tree can be downloaded in one go, although this gives you a lot of stuff you probably won't need). There is further documentation to be found at the Gene Ontology Software Group site).
There are also a couple of scripts available on the GO FTP site which work with the flat file format. They may give you some idea of how to proceed, should you need to stick with flat files for whatever reason.
Hope this helps,
Tim
Update: Turns out, the Perl API includes a module specifically for parsing GO flat files. Have fun :-)
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Re: Re: Network format for Gene Ontology
by matth (Monk) on Jan 03, 2003 at 15:23 UTC | |
by tfrayner (Curate) on Jan 03, 2003 at 15:44 UTC |
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