Sofie has asked for the wisdom of the Perl Monks concerning the following question:

Hi I am very new to perl and struggling with simple things... I am trying to check if an input DNA sequence only contains nucleotides. And if it doesn't I want to print out the position in the sequence where an invalid character was entered. This is as far as I have come:
#!/usr/bin/perl -w $DNA = <STDIN>; chomp ($DNA); @DNA = split ("", $DNA); $lengthseq = scalar @DNA; print "The length of the sequence is:\n", $lengthseq, "\n"; @nucleotideDNA = ""; #check if each element in array is nucleotide foreach $nucleotide (@DNA){ if ($nucleotide =~ /^[ATCG]+$/){ push @nucleotideDNA, $nucleotide; } else { push @nonvalid, $nucleotide; } }
But how can I print the position of the non valid character? Not sure if this makes any sense.. Thanks