Using this code gets me almost exactly what I needed. There still was a few bugs: the link in the main text were sometime not working. Either the file:/// part was missing in a link or some directories were lost from the path to the html files.

I did this: in the pod2html method around line 735

    #Pod::Html::pod2html(@args);    
    my $p = Pod::Simple::HTML->new();
    $p->html_css(substr($args[7],6) );
    my $fn = substr ( $args[5], 10 );
    open FH, ">" . $fn or die("can't open $fn for writing $!");
    $p->output_fh(*FH);
     $p->index(1);
    $fn = substr ( $args[4], 9) ;
    $p->parse_file( $fn ) or die("can't open $fn to parse $!");
    close FH;
[download]

and in the head of the script

   #use Pod::Html qw( 1.04 ); 
   use Pod::Simple::Html;
[download]

With this modification, the link in the text part are working, and the ennoying "manpage" are removed.

Pod::Master is very useful and that's a pity its author never put it on CPAN.

François