P:\test\LCS>type temp >string 1 AACCAGGGTCATAGGAGCCGGCACTATGATCTCTAGTGTTTTAGGAGTAGTGAACCACCTTCCAGACACGGCAGCCAACATTCCGTCTATCGCCTACTCG >string 2 TAGCACGGTGATAAGCTACAATTAACGCCATCTCACGCGCGCGAGTGTGTTCTACTACCCATTATATAAGATGAAAATGAACACTAAGGGCTGGGGCCCT P:\test\LCS>gf temp 000:001 L[ 5] ( 21 81) 000:001 L[ 5] ( 21 81)* 000:001 L[ 5] ( 28 29) 000:001 L[ 5] ( 34 43) 000:001 L[ 5] ( 35 46) 000:001 L[ 5] ( 50 77) 000:001 L[ 5] ( 66 3) 000:001 L[ 5] ( 66 3)* 000:001 L[ 5] ( 93 51) 000:001 L[ 5] ( 93 51)* Completed in 0.009414 Best match: >string 1 - >string 2. 5 characters starting at 21 and 81. Best match: >string 1 - >string 2. 5 characters starting at 21 and 81. Best match: >string 1 - >string 2. 5 characters starting at 28 and 29. Best match: >string 1 - >string 2. 5 characters starting at 34 and 43. Best match: >string 1 - >string 2. 5 characters starting at 35 and 46. Best match: >string 1 - >string 2. 5 characters starting at 50 and 77. Best match: >string 1 - >string 2. 5 characters starting at 66 and 3. Best match: >string 1 - >string 2. 5 characters starting at 66 and 3. Best match: >string 1 - >string 2. 5 characters starting at 93 and 51. Best match: >string 1 - >string 2. 5 characters starting at 93 and 51. P:\test\LCS>484593-5 temp 000:001 L[005] ( 21, 81)'CACTA' ( 28, 29)'ATCTC' ( 34, 43)'AGTGT' ( 35, 46)'GTGTT' ( 50, 77)'TGAAC' ( 66, 3)'CACGG' ( 93, 51)'CTACT' 1 trial of temp ( 147us total), 147us/trial