{v1 => $vertex1, v2 => $vertex2, rna => $rna, state => 1 }


# build a directed graph with this data, vertices have a weight ( score )
 
my $g = Graph->new();

for my $edge ( @E )
{
    my %weights = map { $_->{dna} => $_->{score} } @{$RNA_SEQ{$edge->{rna}}->{alignments}};
    $g->add_weighted_vertices( $edge->{v1}, $weights{$edge->{v1}}, $edge->{v2}, $weights{$edge->{v2}});
    $g->add_edge ( $edge->{v1}, $edge->{v2} );
}

# Print out the graph to see what it looks like  

foreach ( @E )
{
    my $w1 = $g->get_vertex_weight($_->{v1});
    my $w2 = $g->get_vertex_weight($_->{v2});
    print qq[$_->{v1} --> $_->{v2}\t$w1 $w2\n];
}

# Output the edges of the graph with weights for each vertex