P:\test>GF n2l3172.dat
000:001 L[  12] ( 364   23)
000:001 L[  12] ( 364   23)*
000:001 L[  12] ( 364   23)*
000:001 L[  12] ( 364   23)*
000:001 L[  12] (1102 1008)
000:001 L[  12] (1124 2290)
000:001 L[  12] (1506 2529)
000:001 L[  12] (1506 2529)*
000:001 L[  12] (1506 2529)*
000:001 L[  12] (1506 2529)*
000:001 L[  12] (1859  224)
000:001 L[  12] (2046 2360)
000:001 L[  12] (2399 1226)
000:001 L[  12] (2480  401)
000:001 L[  12] (2494  540)
000:001 L[  12] (3023 1102)
Completed in 5.292793
Best match: >1 - >2. 12 characters starting at 364 and 23.
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 364 and 23.*
Best match: >1 - >2. 12 characters starting at 1102 and 1008.
Best match: >1 - >2. 12 characters starting at 1124 and 2290.
Best match: >1 - >2. 12 characters starting at 1506 and 2529.
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1506 and 2529.*
Best match: >1 - >2. 12 characters starting at 1859 and 224.
Best match: >1 - >2. 12 characters starting at 2046 and 2360.
Best match: >1 - >2. 12 characters starting at 2399 and 1226.
Best match: >1 - >2. 12 characters starting at 2480 and 401.
Best match: >1 - >2. 12 characters starting at 2494 and 540.
Best match: >1 - >2. 12 characters starting at 3023 and 1102.

##</code><code>##

P:\test>484593-5 n2l3172.dat
000:001 L[012]   ( 364,  23)'CAGGAGCGGGCG'
                 (1102,1008)'ACAGCCACGAAA'
                 (1124,2290)'AGCAGGAAGGAG'
                 (1506,2529)'GCGCGAAGCAAA'
                 (1859, 224)'AACAGGAAGGGA'
                 (2046,2360)'CAGAGCCCACAG'
                 (2399,1226)'GGCGCAACCCGG'
                 (2480, 401)'GGGGCCGGCAAC'
                 (2494, 540)'CGCAGCAGAAAC'
                 (3023,1102)'GGCAGCAAGGGC'
  1 trial  of n2l3172.dat (132.223ms total), 132.223ms/trial

##</code><code>##

P:\test\LCS>type temp
>string 1
AACCAGGGTCATAGGAGCCGGCACTATGATCTCTAGTGTTTTAGGAGTAGTGAACCACCTTCCAGACACGGCAGCCAACATTCCGTCTATCGCCTACTCG
>string 2
TAGCACGGTGATAAGCTACAATTAACGCCATCTCACGCGCGCGAGTGTGTTCTACTACCCATTATATAAGATGAAAATGAACACTAAGGGCTGGGGCCCT

P:\test\LCS>gf temp
000:001 L[   5] (  21   81)
000:001 L[   5] (  21   81)*
000:001 L[   5] (  28   29)
000:001 L[   5] (  34   43)
000:001 L[   5] (  35   46)
000:001 L[   5] (  50   77)
000:001 L[   5] (  66    3)
000:001 L[   5] (  66    3)*
000:001 L[   5] (  93   51)
000:001 L[   5] (  93   51)*
Completed in 0.009414
Best match: >string 1 - >string 2. 5 characters starting at 21 and 81.
Best match: >string 1 - >string 2. 5 characters starting at 21 and 81.
Best match: >string 1 - >string 2. 5 characters starting at 28 and 29.
Best match: >string 1 - >string 2. 5 characters starting at 34 and 43.
Best match: >string 1 - >string 2. 5 characters starting at 35 and 46.
Best match: >string 1 - >string 2. 5 characters starting at 50 and 77.
Best match: >string 1 - >string 2. 5 characters starting at 66 and 3.
Best match: >string 1 - >string 2. 5 characters starting at 66 and 3.
Best match: >string 1 - >string 2. 5 characters starting at 93 and 51.
Best match: >string 1 - >string 2. 5 characters starting at 93 and 51.

P:\test\LCS>484593-5 temp
000:001 L[005]   (  21,  81)'CACTA'
                 (  28,  29)'ATCTC'
                 (  34,  43)'AGTGT'
                 (  35,  46)'GTGTT'
                 (  50,  77)'TGAAC'
                 (  66,   3)'CACGG'
                 (  93,  51)'CTACT'
  1 trial  of temp (    147us total), 147us/trial

##</code><code>##

P:\test\LCS>type temp
>string 1
AAATATCTCGATAATTAGTA
>string 2
TGACTAGATCATATAACCAC

P:\test\LCS>gf temp
000:001 L[   4] (   2   10)
000:001 L[   4] (   2   10)
000:001 L[   4] (  10   12)
Completed in 0.00106
Best match: >string 1 - >string 2. 4 characters starting at 2 and 10.
Best match: >string 1 - >string 2. 4 characters starting at 2 and 10.
Best match: >string 1 - >string 2. 4 characters starting at 10 and 12.

P:\test\LCS>484593-5 temp
000:001 L[004]   (   2,  10)'ATAT'
                 (  10,  12)'ATAA'
  1 trial  of temp (     36us total), 36us/trial