C:\test>1120869 -BIG=5e6 -FUZZ=1 -MIN=10 -NSHORTS=10000 | wc -l
Indexed search took 1.509765148 secs
      2


##</code><code>##

C:\test>1120869 -BIG=5e6 -FUZZ=2 -MIN=6 -NSHORTS=10000 | wc -l
Indexed search took 395.132736921 secs
     80

C:\test>1120869 -BIG=5e6 -FUZZ=2 -MIN=6 -NSHORTS=10000
AAACTTGTTACCGGGGTACT ~ TAACTTGTTACCGGGTTACT ( AACTTGTTACCGGG TACT) [18 of 20] at 1423486
CTCGCCATGTAAGTTATGGT ~ CCCGCCATGAAAGTTATGGT (C CGCCATG AAGTTATGGT) [18 of 20] at 3739837
ACTCAGGAGCATATGAGCAA ~ ACTCGGGAGCATATGAGCAG (ACTC GGAGCATATGAGCA ) [18 of 20] at 117017
GCGCACTACAACCTCTTAAA ~ GCGCACTACAACGTCTTATA (GCGCACTACAAC TCTTA A) [18 of 20] at 2758181
CCAGTATATGATACGAACGC ~ CCAGTATCTGGTACGAACGC (CCAGTAT TG TACGAACGC) [18 of 20] at 2681307
CTCGCACGATTACGACCGAA ~ CTCGCAGAATTACGACCGAA (CTCGCA  ATTACGACCGAA) [18 of 20] at 4658451
...

##</code><code>##

C:\test>1120869 -BIG=5e6 -FUZZ=3 -MIN=5 -NSHORTS=10000 | wc -l
Indexed search took 1763.693833113 secs
   1455