file1.db: zm811463 1190 31050 - A/G/T/C zm811462 1190 31051 - C/T zm1829427 1190 31789 + A/G zm445312 1190 31883 - A/G zm5377419 1190 32419 + A/C zm1052506 1190 32829 + C/G zm1052507 1190 32886 + A/C/T zm9115338 1190 33832 + A/G/CC file2.query 1190 31277 A > T 1 0 0 1190 31607 C > A 0 3 1 1190 31629 C > T 0 2 0 1190 31789 A > G 1 2 5 1190 31882 A > C 0 4 0 1190 31883 T > A 0 4 0 1190 31883 T > C 2 2 5 1190 32199 C > T 0 1 1 1190 32487 T > C 0 1 1 1190 32496 A > G 0 3 0 output which i am getting now: 1190 31277 A > T 1 0 0 - 1190 31607 C > A 0 3 1 - 1190 31629 C > T 0 2 0 - 1190 31789 A > G 1 2 5 zm1829427 1190 31882 A > C 0 4 0 - 1190 32199 C > T 0 1 1 - 1190 32487 T > C 0 1 1 - 1190 32496 A > G 0 3 0 - Total number of HITS: 1 BUT, i want my output look like: 1190 31277 A > T 1 0 0 - 1190 31607 C > A 0 3 1 - 1190 31629 C > T 0 2 0 - 1190 31789 A > G 1 2 5 zm1829427 1190 31882 A > C 0 4 0 - 1190 31883 T > A 0 4 0 - 1190 31883 T > C 2 2 5 - 1190 32199 C > T 0 1 1 - 1190 32487 T > C 0 1 1 - 1190 32496 A > G 0 3 0 - Total number of HITS: 1